K-means clustering with 9 clusters of sizes 29, 52, 1, 112, 22, 241, 133, 5, 9
Cluster means:
sum_AGEs sum_acetyl sum_Kacyl sum_oxPTMs sum_phospho sum_ubiq
1 3.37868720 0.03220139 1.717553047 1.218420232 -0.2008470 0.27987039
2 0.09739856 -0.08993029 -0.008535214 -0.007444554 -0.2069497 -0.06560473
3 -0.06111326 0.15343671 13.754972675 12.023702972 6.6491871 0.94645574
4 -0.34827300 -0.14127678 -0.165647056 -0.383558084 0.4599978 -0.24193913
5 -0.21077431 -0.13146019 -0.015714009 -0.058546079 -0.0547253 -0.07225921
6 -0.14607754 -0.05382450 -0.170146326 -0.018117898 -0.2198687 -0.04674529
7 -0.17047409 -0.11484986 -0.157641666 -0.116325441 -0.1791270 -0.12060570
8 -0.07706908 9.89168721 1.489117272 1.121958534 0.5972500 0.38229882
9 -0.11987148 0.12139112 1.144890940 1.278183408 3.7163298 5.38114572
sum_meth ageing_score mean_hl_hours mean_mt ratio
1 0.74099573 -0.1319528 0.06961253 -0.41431559 -0.36779085
2 0.09100790 -0.1498171 2.16798933 0.25840785 -0.41407991
3 17.56155324 -0.0365172 -0.52727817 0.52352412 1.75461979
4 -0.20914633 -0.1594968 -0.43252306 0.09817507 1.60153788
5 -0.14769109 4.5010575 0.19756813 -0.11777628 -0.27256764
6 -0.13732794 -0.1655811 -0.23984692 0.66578679 -0.46954036
7 0.01468209 -0.1960940 -0.03726127 -1.31346370 -0.24532172
8 0.25472832 -0.3234399 -0.43795545 0.63149076 0.46123044
9 1.41782519 -0.2114706 -0.57580138 0.08094353 0.06095318
Clustering vector:
1433B_HUMAN 1433E_HUMAN 1433F_HUMAN 1433G_HUMAN 1433Z_HUMAN 2AAA_HUMAN
7 2 7 7 6 6
2ABA_HUMAN 3HIDH_HUMAN 6PGL_HUMAN AAAT_HUMAN AATC_HUMAN ABHDA_HUMAN
7 6 7 6 6 2
ACADM_HUMAN ACBP_HUMAN ACL6A_HUMAN ACLY_HUMAN ACON_HUMAN ACTB_HUMAN
7 7 6 6 7 7
ACTN1_HUMAN ACTN4_HUMAN ADK_HUMAN ADNP_HUMAN AHNK_HUMAN AIMP1_HUMAN
2 6 6 4 4 7
AKA12_HUMAN AL9A1_HUMAN ALDH2_HUMAN ALDOC_HUMAN ALDR_HUMAN AMPL_HUMAN
2 2 7 7 2 6
AN32A_HUMAN AN32B_HUMAN AN32E_HUMAN ANLN_HUMAN ANM5_HUMAN ANXA5_HUMAN
2 2 7 4 6 6
AP3B1_HUMAN AQR_HUMAN ARFP1_HUMAN ARI1A_HUMAN ARP2_HUMAN ARP3_HUMAN
6 6 6 4 7 7
ASAH1_HUMAN ASNS_HUMAN AT1B3_HUMAN ATX10_HUMAN BASI_HUMAN BASP1_HUMAN
6 6 1 7 7 4
BAZ1B_HUMAN BOLA2_HUMAN BRD4_HUMAN BROX_HUMAN BYST_HUMAN BZW1_HUMAN
4 7 4 7 4 6
C1TC_HUMAN C2D1A_HUMAN CALR_HUMAN CALU_HUMAN CAND1_HUMAN CAPR1_HUMAN
6 4 1 7 6 4
CATA_HUMAN CATC_HUMAN CATD_HUMAN CAZA1_HUMAN CBR1_HUMAN CBX3_HUMAN
6 2 7 7 1 7
CBX5_HUMAN CCAR1_HUMAN CCAR2_HUMAN CCD12_HUMAN CD2AP_HUMAN CDC42_HUMAN
4 4 5 4 4 6
CDC5L_HUMAN CDK12_HUMAN CE152_HUMAN CH10_HUMAN CH60_HUMAN CHD6_HUMAN
4 4 6 6 2 7
CHD7_HUMAN CHD8_HUMAN CHRD1_HUMAN CHTOP_HUMAN CKAP4_HUMAN CKAP5_HUMAN
4 4 7 4 2 6
CLH1_HUMAN CLIC1_HUMAN CLIP1_HUMAN CLPX_HUMAN CLU_HUMAN CNBP_HUMAN
7 2 4 6 6 6
COPB_HUMAN COPD_HUMAN COPG1_HUMAN COTL1_HUMAN CPIN1_HUMAN CPSF1_HUMAN
7 6 7 2 6 7
CPSF2_HUMAN CPSF5_HUMAN CPSF7_HUMAN CSK21_HUMAN CSN6_HUMAN CSTF2_HUMAN
9 7 4 7 7 4
CSTF3_HUMAN CTR9_HUMAN CUL1_HUMAN CUL3_HUMAN CUL4A_HUMAN CWC15_HUMAN
6 4 6 6 6 8
CX6B1_HUMAN CYBP_HUMAN DAZP1_HUMAN DCK_HUMAN DDB1_HUMAN DDX21_HUMAN
6 6 4 6 6 4
DDX42_HUMAN DDX46_HUMAN DEK_HUMAN DHE3_HUMAN DHX15_HUMAN DHX36_HUMAN
4 7 4 2 6 6
DHX9_HUMAN DIDO1_HUMAN DKC1_HUMAN DLDH_HUMAN DNJA2_HUMAN DNJB1_HUMAN
1 4 6 6 9 7
DNJC1_HUMAN DNLI3_HUMAN DNMT1_HUMAN DRG1_HUMAN DRG2_HUMAN DSRAD_HUMAN
4 6 6 6 7 7
DX39B_HUMAN ECH1_HUMAN ECHA_HUMAN ECHM_HUMAN EDC4_HUMAN EDF1_HUMAN
2 1 1 1 4 4
EEA1_HUMAN EF1B_HUMAN EF1G_HUMAN EF2_HUMAN EFGM_HUMAN EFTU_HUMAN
6 7 7 6 6 1
EIF3A_HUMAN EIF3E_HUMAN EIF3I_HUMAN EIF3J_HUMAN EIF3M_HUMAN ELL_HUMAN
4 6 6 4 7 4
ENOA_HUMAN ENPL_HUMAN ERAP1_HUMAN ERCC3_HUMAN ERH_HUMAN ERP29_HUMAN
2 1 6 6 8 7
ESTD_HUMAN ETFA_HUMAN ETFB_HUMAN EZRI_HUMAN F10A1_HUMAN F136A_HUMAN
6 7 2 7 4 7
FABP5_HUMAN FAF1_HUMAN FAH2A_HUMAN FAS_HUMAN FEN1_HUMAN FIP1_HUMAN
6 6 2 6 5 4
FKBP3_HUMAN FKBP4_HUMAN FKBP8_HUMAN FLNA_HUMAN FLNB_HUMAN FPPS_HUMAN
6 1 6 6 6 7
FUBP1_HUMAN FUBP2_HUMAN G3BP1_HUMAN G3BP2_HUMAN G3P_HUMAN G6PD_HUMAN
4 4 4 4 2 6
G6PI_HUMAN GANAB_HUMAN GFPT1_HUMAN GLYM_HUMAN GOGB1_HUMAN GRP75_HUMAN
2 7 7 6 6 7
GRPE1_HUMAN GSHR_HUMAN GSLG1_HUMAN GSTO1_HUMAN GSTP1_HUMAN GT251_HUMAN
1 2 6 7 7 1
HCD2_HUMAN HDDC2_HUMAN HEAT1_HUMAN HEM6_HUMAN HNRH3_HUMAN HNRL1_HUMAN
2 6 6 6 6 4
HNRL2_HUMAN HNRPF_HUMAN HNRPL_HUMAN HNRPM_HUMAN HNRPQ_HUMAN HNRPR_HUMAN
7 7 6 6 7 7
HNRPU_HUMAN HS105_HUMAN HS90A_HUMAN HS90B_HUMAN HSP74_HUMAN HSP7C_HUMAN
7 6 5 5 7 5
HXK2_HUMAN HYOU1_HUMAN IDH3A_HUMAN IDI1_HUMAN IF2A_HUMAN IF2B_HUMAN
6 7 7 6 6 6
IF2G_HUMAN IF2P_HUMAN IF4A3_HUMAN IF4G1_HUMAN IF5_HUMAN IF6_HUMAN
6 4 6 4 7 6
ILEU_HUMAN ILF3_HUMAN IMA4_HUMAN IMA5_HUMAN IMB1_HUMAN INCE_HUMAN
2 4 6 6 6 4
IPO7_HUMAN IPYR_HUMAN IQGA1_HUMAN ITB1_HUMAN IVD_HUMAN IWS1_HUMAN
6 9 6 1 1 9
JUND_HUMAN KAD2_HUMAN KAD3_HUMAN KHDR1_HUMAN KINH_HUMAN KPYM_HUMAN
4 2 2 4 6 6
KTHY_HUMAN KYNU_HUMAN LACB2_HUMAN LAP2A_HUMAN LARP1_HUMAN LASP1_HUMAN
6 6 6 2 4 4
LA_HUMAN LBR_HUMAN LDHA_HUMAN LDHB_HUMAN LEG1_HUMAN LETM1_HUMAN
2 7 6 2 1 6
LGUL_HUMAN LIS1_HUMAN LKHA4_HUMAN LMNA_HUMAN LMNB1_HUMAN LONM_HUMAN
6 6 6 4 2 6
LPPRC_HUMAN LRC47_HUMAN LRC59_HUMAN LS14A_HUMAN LSM6_HUMAN LSM8_HUMAN
7 7 1 4 6 8
LUZP1_HUMAN LYAR_HUMAN LYPA1_HUMAN MANF_HUMAN MAOM_HUMAN MAP2_HUMAN
4 9 6 6 7 7
MAP4_HUMAN MARCS_HUMAN MAT2B_HUMAN MATR3_HUMAN MBD3_HUMAN MCES_HUMAN
4 1 6 4 4 6
MCM2_HUMAN MCM4_HUMAN MCM5_HUMAN MCM6_HUMAN MCMBP_HUMAN MD2L1_HUMAN
7 6 6 6 7 6
MDC1_HUMAN MDHC_HUMAN MDHM_HUMAN MDN1_HUMAN MECP2_HUMAN MEF2D_HUMAN
4 2 2 6 2 4
METK2_HUMAN MIF_HUMAN MK01_HUMAN MK14_HUMAN MNT_HUMAN MOES_HUMAN
6 6 5 5 8 1
MPPB_HUMAN MPRD_HUMAN MSH6_HUMAN MYH9_HUMAN MYPT1_HUMAN NAA15_HUMAN
6 6 6 7 4 6
NDUS1_HUMAN NDUS3_HUMAN NEB2_HUMAN NEDD8_HUMAN NIPS1_HUMAN NIT2_HUMAN
7 6 3 7 6 7
NMT1_HUMAN NOLC1_HUMAN NONO_HUMAN NP1L4_HUMAN NPM_HUMAN NPTX1_HUMAN
6 4 7 7 5 6
NSF_HUMAN NU133_HUMAN NUCB1_HUMAN NUCL_HUMAN NUP50_HUMAN NUP88_HUMAN
6 6 4 4 7 6
ODO2_HUMAN ODP2_HUMAN ODPA_HUMAN ODPB_HUMAN P4HA1_HUMAN P5CS_HUMAN
2 6 6 6 7 7
P66A_HUMAN PA2G4_HUMAN PABP1_HUMAN PAIRB_HUMAN PARK7_HUMAN PARP1_HUMAN
4 7 7 4 5 5
PCKGM_HUMAN PCNA_HUMAN PDC6I_HUMAN PDCD5_HUMAN PDCD6_HUMAN PDIA1_HUMAN
7 5 6 7 6 6
PDIA3_HUMAN PDIA4_HUMAN PDIA6_HUMAN PDLI1_HUMAN PDS5B_HUMAN PEBP1_HUMAN
1 1 7 6 6 6
PELP1_HUMAN PFD2_HUMAN PFD4_HUMAN PFD6_HUMAN PGAM1_HUMAN PGK1_HUMAN
7 7 7 7 1 2
PGM1_HUMAN PGM2_HUMAN PGRC2_HUMAN PIMT_HUMAN PITH1_HUMAN PLBL2_HUMAN
2 2 7 7 6 6
PLEC_HUMAN PLOD1_HUMAN PLPL6_HUMAN PLRG1_HUMAN PNPH_HUMAN PNPT1_HUMAN
7 6 6 6 6 7
PP1A_HUMAN PP1RA_HUMAN PPCEL_HUMAN PPCE_HUMAN PPIA_HUMAN PPIB_HUMAN
6 4 6 6 7 1
PPIH_HUMAN PRDX1_HUMAN PRDX2_HUMAN PRDX3_HUMAN PRDX5_HUMAN PRDX6_HUMAN
6 7 2 2 7 1
PRKDC_HUMAN PROF1_HUMAN PRP19_HUMAN PRP4_HUMAN PRP6_HUMAN PRP8_HUMAN
5 1 7 7 6 7
PRS4_HUMAN PRS6B_HUMAN PRS7_HUMAN PRS8_HUMAN PSA1_HUMAN PSA2_HUMAN
6 6 6 6 6 2
PSA3_HUMAN PSA5_HUMAN PSA7_HUMAN PSA_HUMAN PSB1_HUMAN PSD11_HUMAN
6 6 6 6 6 6
PSD12_HUMAN PSMD1_HUMAN PSMD2_HUMAN PSMD3_HUMAN PSMD5_HUMAN PSME1_HUMAN
6 6 6 6 6 7
PSME3_HUMAN PTBP1_HUMAN PUF60_HUMAN PUR6_HUMAN PUR9_HUMAN PURA_HUMAN
6 7 7 6 7 4
PUS7_HUMAN PYC_HUMAN QCR7_HUMAN QOR_HUMAN RAB14_HUMAN RAB5C_HUMAN
6 6 2 6 6 7
RAC1_HUMAN RADI_HUMAN RAE1L_HUMAN RAGP1_HUMAN RBM12_HUMAN RBM26_HUMAN
6 4 6 6 4 4
RBM4_HUMAN RBM8A_HUMAN RCC2_HUMAN RD23A_HUMAN RD23B_HUMAN RECQ1_HUMAN
7 4 4 4 4 7
RENT1_HUMAN REPS1_HUMAN RFA1_HUMAN RFA2_HUMAN RL10_HUMAN RL12_HUMAN
9 4 5 5 6 1
RL14_HUMAN RL23A_HUMAN RL27A_HUMAN RL27_HUMAN RL30_HUMAN RL3_HUMAN
7 6 6 6 6 6
RL4_HUMAN RL5_HUMAN RL7_HUMAN RM12_HUMAN RM49_HUMAN ROA2_HUMAN
6 6 6 2 6 7
RPA1_HUMAN RPA2_HUMAN RPB2_HUMAN RPN1_HUMAN RRP44_HUMAN RS12_HUMAN
6 6 6 6 7 9
RS13_HUMAN RS20_HUMAN RS28_HUMAN RS3_HUMAN RS6_HUMAN RS8_HUMAN
6 6 1 5 4 6
RS9_HUMAN RSF1_HUMAN RSU1_HUMAN RT29_HUMAN RTCB_HUMAN RU17_HUMAN
6 4 6 6 6 4
RU2B_HUMAN S10A6_HUMAN SAFB1_HUMAN SAFB2_HUMAN SAHH_HUMAN SAP_HUMAN
6 2 4 4 6 6
SBDS_HUMAN SCOT1_HUMAN SERC_HUMAN SERPH_HUMAN SET_HUMAN SF01_HUMAN
6 2 6 7 4 4
SF3A1_HUMAN SF3A3_HUMAN SF3B1_HUMAN SF3B2_HUMAN SF3B3_HUMAN SF3B5_HUMAN
4 7 6 4 6 8
SFPQ_HUMAN SGT1_HUMAN SIN3A_HUMAN SLIRP_HUMAN SMC1A_HUMAN SMC3_HUMAN
4 6 5 7 6 7
SMCA4_HUMAN SMCA5_HUMAN SMD1_HUMAN SMD2_HUMAN SMRC1_HUMAN SND1_HUMAN
4 6 6 2 4 7
SNR40_HUMAN SNUT1_HUMAN SNX3_HUMAN SNX6_HUMAN SODC_HUMAN SP16H_HUMAN
6 4 6 6 5 6
SPB6_HUMAN SPSY_HUMAN SPT5H_HUMAN SPTB2_HUMAN SPTN1_HUMAN SR140_HUMAN
2 1 4 7 7 4
SRP14_HUMAN SRPK1_HUMAN SRRT_HUMAN SRS11_HUMAN SRSF6_HUMAN SRSF7_HUMAN
6 4 7 4 4 4
SSRP1_HUMAN STAG2_HUMAN STAT1_HUMAN STIP1_HUMAN STRAP_HUMAN SUCB1_HUMAN
4 6 5 7 7 7
SUCB2_HUMAN SUMO2_HUMAN SYAM_HUMAN SYDM_HUMAN SYFB_HUMAN SYIM_HUMAN
7 4 7 6 6 6
SYLM_HUMAN SYMPK_HUMAN T2EB_HUMAN TACC3_HUMAN TAGL2_HUMAN TCEA1_HUMAN
6 6 7 4 7 6
TCOF_HUMAN TCP4_HUMAN TCPA_HUMAN TCPD_HUMAN TCPE_HUMAN TCPH_HUMAN
4 4 6 6 7 6
TCPZ_HUMAN TCRG1_HUMAN TCTP_HUMAN TERA_HUMAN TFCP2_HUMAN TFR1_HUMAN
6 7 7 5 6 6
THIC_HUMAN THIL_HUMAN THIM_HUMAN THOC1_HUMAN THOC2_HUMAN THOC6_HUMAN
7 2 2 1 6 6
TIF1B_HUMAN TKT_HUMAN TLN1_HUMAN TMOD3_HUMAN TNPO1_HUMAN TOP1_HUMAN
7 2 6 6 7 6
TPD54_HUMAN TPIS_HUMAN TPM4_HUMAN TPR_HUMAN TPX2_HUMAN TR150_HUMAN
4 2 7 4 4 4
TRIPC_HUMAN TXD12_HUMAN TXLNA_HUMAN TXND5_HUMAN TYPH_HUMAN TYY1_HUMAN
4 7 4 1 6 4
U2AF2_HUMAN U3IP2_HUMAN U520_HUMAN U5S1_HUMAN UB2L3_HUMAN UBA1_HUMAN
7 9 6 6 6 7
UBA6_HUMAN UBL5_HUMAN UBR5_HUMAN UBXN1_HUMAN UFC1_HUMAN UGPA_HUMAN
6 6 6 4 6 2
VASP_HUMAN VATB2_HUMAN VATC1_HUMAN VIGLN_HUMAN VIME_HUMAN VINC_HUMAN
4 6 6 6 7 2
VPS29_HUMAN VPS35_HUMAN VPS4B_HUMAN VTA1_HUMAN WDR1_HUMAN WDR26_HUMAN
6 6 6 7 6 6
WDR5_HUMAN WIPF1_HUMAN XPO1_HUMAN XPO7_HUMAN XPOT_HUMAN XRCC5_HUMAN
2 4 6 7 6 5
XRCC6_HUMAN XRN2_HUMAN ZC3H4_HUMAN ZC3HF_HUMAN ZCHC8_HUMAN ZFR_HUMAN
5 6 4 7 4 6
ZMAT2_HUMAN ZN638_HUMAN ZPR1_HUMAN CKS2_HUMAN FBX28_HUMAN PLK1_HUMAN
6 4 7 6 4 5
SHCBP_HUMAN UBE2S_HUMAN PANK3_HUMAN HXA9_HUMAN
9 6 6 4
Within cluster sum of squares by cluster:
[1] 366.0494 325.3350 0.0000 420.8315 140.1416 578.6450 390.6206 145.5366
[9] 574.2322
(between_SS / total_SS = 55.7 %)
Available components:
[1] "cluster" "centers" "totss" "withinss" "tot.withinss"
[6] "betweenss" "size" "iter" "ifault"
K means clustering
K means
Complete dataset
Joining everything:
Evaluation of results:
Length Class Mode
cluster 604 -none- numeric
centers 99 -none- numeric
totss 1 -none- numeric
withinss 9 -none- numeric
tot.withinss 1 -none- numeric
betweenss 1 -none- numeric
size 9 -none- numeric
iter 1 -none- numeric
ifault 1 -none- numeric
Getting the cluster members:
Heatmap to see the patterns:
B cells cytoplasm
Extra B cells stuff:
Joining everything:
K-means clustering with 21 clusters of sizes 112, 78, 3, 58, 2, 2, 113, 2, 1, 4, 3, 2, 1, 64, 1, 24, 10, 3, 14, 76, 1
Cluster means:
sum_acetyl_cyto_old sum_acetyl_cyto_young sum_AGEs_cyto_old
1 -0.05574548 0.00329445 -0.08940024
2 -0.08874043 -0.11157139 -0.09413095
3 -0.12119350 -0.12346193 -0.09413095
4 -0.12119350 -0.12346193 -0.09413095
5 13.90628726 -0.12346193 -0.09413095
6 -0.12119350 -0.12346193 -0.09413095
7 -0.09153319 -0.05108593 -0.09159079
8 3.22038695 2.45209929 -0.09413095
9 -0.12119350 -0.12346193 -0.09413095
10 -0.01680829 0.12353901 11.00743245
11 -0.12119350 -0.12346193 -0.09413095
12 -0.12119350 -0.12346193 -0.09413095
13 -0.12119350 -0.12346193 -0.09413095
14 -0.11103540 -0.07462663 -0.09413095
15 -0.12119350 -0.12346193 -0.09413095
16 0.12260427 0.27846851 -0.09413095
17 0.28286779 0.14644827 -0.09413095
18 -0.06263037 0.29057995 -0.09413095
19 -0.12119350 -0.12346193 -0.09413095
20 -0.10777267 -0.07542071 0.02176426
21 9.33752830 20.93774457 -0.09413095
sum_AGEs_cyto_young sum_Kacyl_cyto_old sum_Kacyl_cyto_young
1 -0.05935759 -0.06877440 -0.07233615
2 -0.05719505 -0.07272657 -0.07233615
3 -0.05935759 -0.07272657 -0.07233615
4 -0.05935759 -0.07272657 -0.07233615
5 -0.05935759 -0.07272657 -0.07233615
6 -0.05935759 -0.07272657 -0.07233615
7 -0.05935759 -0.07272657 -0.07233615
8 16.89193272 -0.07272657 -0.07233615
9 -0.05935759 -0.07272657 -0.07233615
10 -0.05935759 -0.07272657 -0.07233615
11 -0.05935759 -0.07272657 -0.07233615
12 -0.05935759 -0.07272657 -0.07233615
13 -0.05935759 21.36623903 -0.07233615
14 -0.05935759 -0.07272657 -0.07233615
15 -0.05935759 -0.07272657 -0.07233615
16 -0.05935759 0.47809656 -0.07233615
17 -0.05935759 -0.07272657 -0.07233615
18 -0.05935759 1.66415476 13.76798062
19 -0.05935759 -0.07272657 -0.07233615
20 -0.05935759 -0.05387072 -0.07233615
21 -0.05935759 -0.07272657 -0.07233615
sum_oxPTMs_cyto_old sum_oxPTMs_cyto_young sum_phospho_cyto_old
1 -0.112085460 -0.09918071 -0.098777134
2 -0.265586912 -0.20660060 -0.073519674
3 -0.209134749 -0.07494835 0.536193327
4 -0.362966537 -0.26528859 0.009182094
5 0.808574493 -0.29676601 -0.099410470
6 -0.408605725 -0.29676601 -0.099410470
7 -0.308538049 -0.23191416 -0.096112779
8 -0.019765990 0.39012831 -0.099410470
9 -0.408605725 -0.29676601 -0.099410470
10 0.803963042 1.11774238 0.063892017
11 0.308428889 0.47738665 -0.099410470
12 4.126115569 1.02149456 15.806874819
13 -0.003604577 0.05001814 -0.099410470
14 -0.336511461 -0.23083996 -0.071534963
15 7.047457992 19.46413123 -0.099410470
16 3.136930356 1.46273519 0.017747491
17 0.425964392 0.63295550 -0.099410470
18 1.362915040 0.53657631 -0.099410470
19 0.028816197 -0.06170822 0.541820554
20 0.104365595 0.19965507 -0.094745516
21 -0.408605725 -0.29676601 -0.099410470
sum_phospho_cyto_young sum_ubiq_cyto_old sum_ubiq_cyto_young
1 -0.03181933 -0.122541632 -0.05940235
2 -0.09103226 -0.152078921 -0.11756757
3 0.69272361 -0.157456354 -0.11756757
4 0.01491517 -0.157456354 -0.11517610
5 -0.09166779 -0.157456354 -0.11756757
6 -0.09166779 -0.157456354 -0.11756757
7 -0.08353426 -0.125407871 -0.11726220
8 -0.09166779 -0.157456354 -0.11756757
9 21.27729407 -0.157456354 -0.11756757
10 -0.09166779 0.357816593 0.49347001
11 -0.09166779 -0.157456354 -0.11756757
12 2.86491891 2.733814847 -0.11756757
13 -0.09166779 -0.157456354 -0.11756757
14 -0.03506203 -0.135021277 -0.11756757
15 -0.09166779 -0.157456354 -0.11756757
16 -0.09166779 -0.007346495 0.12503633
17 -0.09166779 5.998705925 4.69174395
18 -0.09166779 0.362500082 -0.11756757
19 0.29679424 -0.143677467 -0.11756757
20 -0.09078273 -0.075455464 -0.05919508
21 -0.09166779 -0.157456354 -0.11756757
sum_meth_cyto_old sum_meth_cyto_young mean_hl_hours mean_mt ratio
1 -0.08078889 -0.05931590 0.06896626 -1.22089828 -0.5040832
2 -0.11003022 -0.11567541 -0.23841393 0.69935919 0.3224522
3 11.78719653 -0.11989850 -0.19081638 0.55857537 0.6499053
4 -0.08165294 -0.09875645 -0.32407146 0.59602937 1.8202854
5 -0.11592231 -0.11989850 0.10063362 0.57238851 0.9879969
6 -0.11592231 -0.11989850 11.86382142 0.59968265 1.7391539
7 -0.04832724 -0.11989850 -0.42802174 0.70328811 -0.6608278
8 -0.11592231 -0.11989850 -0.29053861 -0.08819093 -0.6748889
9 -0.11592231 -0.11989850 -0.78254565 -0.24933640 1.3617489
10 0.04887079 0.36215814 1.16493044 0.38495787 -0.8216846
11 3.70113164 8.97024141 0.07556561 -0.82212016 -0.5575070
12 -0.11592231 -0.11989850 -0.60989997 0.65943529 1.1583761
13 -0.11592231 -0.11989850 -0.31678078 -0.29702243 -0.5585838
14 -0.08313114 -0.05971667 -0.19574581 -1.34842749 1.2802011
15 -0.11592231 -0.11989850 -0.28049576 -2.06981847 -0.6663757
16 -0.05358586 -0.05959855 0.42460265 0.02048904 -0.5747182
17 -0.11592231 -0.11989850 -0.08155507 -0.08777467 -0.3851672
18 -0.11592231 5.08009253 -0.14871290 0.53509817 -0.3345709
19 -0.11592231 -0.11989850 2.62559045 0.42152269 -0.6541450
20 -0.10138794 0.01672509 0.25031861 0.59124498 -0.7411695
21 -0.11592231 -0.11989850 0.78896286 0.77381814 -0.9428366
Clustering vector:
1433B_HUMAN 1433E_HUMAN 1433F_HUMAN 1433G_HUMAN 1433Z_HUMAN 2AAA_HUMAN
1 20 1 1 20 7
2ABA_HUMAN 3HIDH_HUMAN 6PGL_HUMAN AAAT_HUMAN AATC_HUMAN ABHDA_HUMAN
1 19 1 7 7 19
ACADM_HUMAN ACBP_HUMAN ACL6A_HUMAN ACLY_HUMAN ACON_HUMAN ACTN1_HUMAN
17 1 20 7 1 19
ACTN4_HUMAN ADK_HUMAN ADNP_HUMAN AHNK_HUMAN AIMP1_HUMAN AL9A1_HUMAN
20 19 2 4 1 17
ALDH2_HUMAN ALDOC_HUMAN ALDR_HUMAN AMPL_HUMAN AN32A_HUMAN AN32B_HUMAN
1 1 1 20 2 2
AN32E_HUMAN ANM5_HUMAN ANXA5_HUMAN AP3B1_HUMAN AQR_HUMAN ARFP1_HUMAN
14 7 20 2 7 2
ARI1A_HUMAN ARP2_HUMAN ARP3_HUMAN ASNS_HUMAN ATX10_HUMAN B2MG_HUMAN
4 16 1 7 17 7
BASI_HUMAN BASP1_HUMAN BAZ1B_HUMAN BIP_HUMAN BOLA2_HUMAN BRD4_HUMAN
1 14 2 1 15 4
BYST_HUMAN BZW1_HUMAN C1TC_HUMAN C2D1A_HUMAN CALR_HUMAN CAND1_HUMAN
2 7 7 14 14 20
CAPR1_HUMAN CATA_HUMAN CATD_HUMAN CAZA1_HUMAN CBR1_HUMAN CBX3_HUMAN
14 16 1 16 1 14
CBX5_HUMAN CCAR1_HUMAN CCAR2_HUMAN CD2AP_HUMAN CDC42_HUMAN CDC5L_HUMAN
14 14 17 14 7 4
CDC73_HUMAN CDK12_HUMAN CH10_HUMAN CH60_HUMAN CHRD1_HUMAN CHTOP_HUMAN
2 4 20 20 1 4
CKAP4_HUMAN CKAP5_HUMAN CLH1_HUMAN CLIC1_HUMAN CLIP1_HUMAN CLPX_HUMAN
2 2 1 20 4 7
CLU_HUMAN CNBP_HUMAN COPB_HUMAN COPD_HUMAN COPG1_HUMAN COTL1_HUMAN
7 17 1 2 1 16
CPIN1_HUMAN CPSF1_HUMAN CPSF2_HUMAN CPSF5_HUMAN CPSF7_HUMAN CSN6_HUMAN
7 1 7 1 4 1
CSTF2_HUMAN CSTF3_HUMAN CTR9_HUMAN CUL1_HUMAN CUL3_HUMAN CUL4A_HUMAN
4 7 2 7 7 7
CWC15_HUMAN CYBP_HUMAN DAZP1_HUMAN DCK_HUMAN DDB1_HUMAN DDX21_HUMAN
5 7 4 16 7 2
DDX42_HUMAN DDX46_HUMAN DEK_HUMAN DHE3_HUMAN DHX15_HUMAN DHX36_HUMAN
14 14 14 19 1 7
DHX9_HUMAN DIDO1_HUMAN DKC1_HUMAN DLDH_HUMAN DNJA1_HUMAN DNJA2_HUMAN
7 4 2 20 7 17
DNJB1_HUMAN DNLI3_HUMAN DNMT1_HUMAN DRG1_HUMAN DRG2_HUMAN DSRAD_HUMAN
14 7 2 7 1 14
DX39B_HUMAN ECH1_HUMAN ECHA_HUMAN ECHM_HUMAN EDC4_HUMAN EDF1_HUMAN
1 16 16 16 2 14
EEA1_HUMAN EF1B_HUMAN EF1G_HUMAN EF2_HUMAN EFGM_HUMAN EFTU_HUMAN
2 1 1 7 3 16
EIF3A_HUMAN EIF3E_HUMAN EIF3I_HUMAN EIF3J_HUMAN EIF3M_HUMAN ELF1_HUMAN
2 20 7 14 1 9
ENOA_HUMAN ENPL_HUMAN ERAP1_HUMAN ERCC3_HUMAN ERH_HUMAN ERP29_HUMAN
1 1 20 7 7 1
ESTD_HUMAN ETFA_HUMAN ETFB_HUMAN EZRI_HUMAN F10A1_HUMAN F136A_HUMAN
20 1 20 14 14 1
FABP5_HUMAN FAF1_HUMAN FAS_HUMAN FEN1_HUMAN FKBP3_HUMAN FKBP4_HUMAN
7 2 7 1 2 7
FKBP8_HUMAN FLNA_HUMAN FLNB_HUMAN FPPS_HUMAN FUBP1_HUMAN FUBP2_HUMAN
2 2 20 1 14 4
G3BP1_HUMAN G3BP2_HUMAN G3P_HUMAN G6PD_HUMAN G6PI_HUMAN GANAB_HUMAN
14 4 1 7 1 1
GFPT1_HUMAN GLYM_HUMAN GOGB1_HUMAN GRP75_HUMAN GRPE1_HUMAN GSHR_HUMAN
1 7 2 11 1 19
GSLG1_HUMAN GSTO1_HUMAN GSTP1_HUMAN GT251_HUMAN HCD2_HUMAN HDDC2_HUMAN
7 1 1 7 20 5
HEAT1_HUMAN HEM6_HUMAN HNRH3_HUMAN HNRL1_HUMAN HNRL2_HUMAN HNRPF_HUMAN
7 7 2 4 14 1
HNRPL_HUMAN HNRPM_HUMAN HNRPQ_HUMAN HNRPR_HUMAN HNRPU_HUMAN HS105_HUMAN
2 2 14 14 14 2
HS90A_HUMAN HS90B_HUMAN HSP74_HUMAN HSP7C_HUMAN HXK2_HUMAN HYOU1_HUMAN
2 1 1 1 7 1
I2BP2_HUMAN IDH3A_HUMAN IDI1_HUMAN IF2A_HUMAN IF2B_HUMAN IF2G_HUMAN
14 1 7 7 2 7
IF2P_HUMAN IF4A3_HUMAN IF4G1_HUMAN IF5_HUMAN IF6_HUMAN ILEU_HUMAN
4 7 4 1 7 16
ILF3_HUMAN IMA1_HUMAN IMA5_HUMAN IMB1_HUMAN IPO7_HUMAN IPYR_HUMAN
14 7 7 20 20 17
IQGA1_HUMAN ITB1_HUMAN IVD_HUMAN IWS1_HUMAN JUND_HUMAN KAD2_HUMAN
16 7 20 4 14 20
KAD3_HUMAN KHDR1_HUMAN KINH_HUMAN KPYM_HUMAN KTHY_HUMAN KYNU_HUMAN
19 14 17 7 7 16
LAP2A_HUMAN LARP1_HUMAN LASP1_HUMAN LA_HUMAN LBR_HUMAN LDHA_HUMAN
14 4 4 2 1 7
LDHB_HUMAN LEG1_HUMAN LETM1_HUMAN LGUL_HUMAN LIS1_HUMAN LKHA4_HUMAN
7 1 2 20 20 10
LMNA_HUMAN LMNB1_HUMAN LONM_HUMAN LPPRC_HUMAN LRC47_HUMAN LRC59_HUMAN
4 6 7 1 1 14
LS14A_HUMAN LSM6_HUMAN LSM8_HUMAN LYAR_HUMAN MANF_HUMAN MAOM_HUMAN
4 20 21 2 7 20
MAP2_HUMAN MAP4_HUMAN MARCS_HUMAN MAT2B_HUMAN MATR3_HUMAN MCES_HUMAN
14 4 4 7 4 2
MCM2_HUMAN MCM4_HUMAN MCM5_HUMAN MCM6_HUMAN MCMBP_HUMAN MDC1_HUMAN
1 7 7 7 1 4
MDHC_HUMAN MDHM_HUMAN MDN1_HUMAN MECP2_HUMAN METK2_HUMAN MIF_HUMAN
20 19 7 6 7 20
MK01_HUMAN MOES_HUMAN MPPB_HUMAN MPRD_HUMAN MSH6_HUMAN MTA2_HUMAN
20 16 7 7 7 1
MYH9_HUMAN MYPT1_HUMAN NAA15_HUMAN NDUS1_HUMAN NDUS3_HUMAN NEB2_HUMAN
1 4 7 1 20 4
NEDD8_HUMAN NIPS1_HUMAN NIT2_HUMAN NMT1_HUMAN NOLC1_HUMAN NONO_HUMAN
1 19 1 2 14 14
NP1L4_HUMAN NPM_HUMAN NSF_HUMAN NU133_HUMAN NU153_HUMAN NUCB1_HUMAN
1 14 7 7 4 4
NUCL_HUMAN NUP50_HUMAN NUP88_HUMAN ODO2_HUMAN ODP2_HUMAN ODPA_HUMAN
14 14 7 19 19 20
ODPB_HUMAN P5CS_HUMAN P66A_HUMAN P66B_HUMAN PA2G4_HUMAN PABP1_HUMAN
20 1 4 4 1 14
PAIRB_HUMAN PARK7_HUMAN PARP1_HUMAN PCKGM_HUMAN PCNA_HUMAN PDC6I_HUMAN
14 20 1 1 1 2
PDCD4_HUMAN PDCD5_HUMAN PDCD6_HUMAN PDIA1_HUMAN PDIA3_HUMAN PDIA4_HUMAN
12 14 7 20 1 1
PDIA6_HUMAN PDLI1_HUMAN PDS5B_HUMAN PEBP1_HUMAN PELP1_HUMAN PFD2_HUMAN
1 16 2 3 14 14
PFD3_HUMAN PFD5_HUMAN PGAM1_HUMAN PGK1_HUMAN PGM1_HUMAN PGM2_HUMAN
1 20 11 10 19 19
PGRC2_HUMAN PIMT_HUMAN PITH1_HUMAN PLEC_HUMAN PLPL6_HUMAN PLRG1_HUMAN
1 11 2 1 7 2
PNPH_HUMAN PNPT1_HUMAN PP1A_HUMAN PP1RA_HUMAN PPCE_HUMAN PPIA_HUMAN
16 1 7 4 16 1
PPIB_HUMAN PPIH_HUMAN PRDX1_HUMAN PRDX2_HUMAN PRDX3_HUMAN PRDX5_HUMAN
1 7 1 20 19 1
PRDX6_HUMAN PRKDC_HUMAN PROF1_HUMAN PRP19_HUMAN PRP4_HUMAN PRP6_HUMAN
18 20 16 1 1 2
PRP8_HUMAN PRS4_HUMAN PRS6B_HUMAN PRS7_HUMAN PRS8_HUMAN PSA1_HUMAN
1 20 20 20 7 7
PSA2_HUMAN PSA3_HUMAN PSA5_HUMAN PSA7_HUMAN PSA_HUMAN PSB1_HUMAN
20 8 20 20 20 20
PSD11_HUMAN PSD12_HUMAN PSMD1_HUMAN PSMD2_HUMAN PSMD3_HUMAN PSMD5_HUMAN
20 17 20 7 2 20
PSME1_HUMAN PSME3_HUMAN PTBP1_HUMAN PUF60_HUMAN PUR6_HUMAN PUR9_HUMAN
1 7 1 1 10 1
PURA_HUMAN PUS7_HUMAN QCR7_HUMAN QKI_HUMAN QOR_HUMAN RAB14_HUMAN
2 7 20 1 20 20
RAB5C_HUMAN RAD21_HUMAN RADI_HUMAN RAE1L_HUMAN RAGP1_HUMAN RBBP4_HUMAN
1 4 14 7 2 18
RBM12_HUMAN RBM26_HUMAN RBM8A_HUMAN RCC2_HUMAN RD23A_HUMAN RD23B_HUMAN
4 4 14 20 4 4
RECQ1_HUMAN RENT1_HUMAN REPS1_HUMAN RFA1_HUMAN RFA2_HUMAN RL10_HUMAN
1 17 4 20 2 7
RL12_HUMAN RL14_HUMAN RL23A_HUMAN RL27A_HUMAN RL27_HUMAN RL30_HUMAN
13 14 2 2 7 7
RL3_HUMAN RL4_HUMAN RL5_HUMAN RL7_HUMAN RM12_HUMAN RM49_HUMAN
20 2 20 7 16 2
ROA2_HUMAN RPA1_HUMAN RPA2_HUMAN RPB2_HUMAN RPN1_HUMAN RRP44_HUMAN
14 7 7 7 20 1
RS12_HUMAN RS13_HUMAN RS20_HUMAN RS28_HUMAN RS3_HUMAN RS6_HUMAN
16 7 18 1 7 2
RS8_HUMAN RS9_HUMAN RSF1_HUMAN RSU1_HUMAN RT29_HUMAN RTCB_HUMAN
2 7 4 7 7 20
RU17_HUMAN RU2B_HUMAN S10A6_HUMAN SAFB1_HUMAN SAFB2_HUMAN SAHH_HUMAN
4 2 20 4 4 20
SAP_HUMAN SBDS_HUMAN SCOT1_HUMAN SERC_HUMAN SET_HUMAN SF01_HUMAN
20 7 1 7 4 14
SF3A1_HUMAN SF3A3_HUMAN SF3B1_HUMAN SF3B2_HUMAN SF3B3_HUMAN SF3B5_HUMAN
4 1 2 14 7 7
SF3B6_HUMAN SFPQ_HUMAN SGT1_HUMAN SIN3A_HUMAN SKP1_HUMAN SLIRP_HUMAN
7 14 7 2 2 1
SMC1A_HUMAN SMC3_HUMAN SMCA4_HUMAN SMCA5_HUMAN SMCE1_HUMAN SMD1_HUMAN
2 1 4 2 14 2
SMD2_HUMAN SMRC1_HUMAN SND1_HUMAN SNR40_HUMAN SNUT1_HUMAN SNX3_HUMAN
2 14 1 7 4 7
SNX6_HUMAN SODC_HUMAN SP16H_HUMAN SPB6_HUMAN SPSY_HUMAN SPT5H_HUMAN
16 14 2 20 1 2
SPTB2_HUMAN SPTN1_HUMAN SR140_HUMAN SRP14_HUMAN SRPK1_HUMAN SRRT_HUMAN
1 1 14 2 2 14
SRS11_HUMAN SRSF6_HUMAN SRSF7_HUMAN SSRP1_HUMAN STAG2_HUMAN STAT1_HUMAN
4 4 14 2 2 7
STIP1_HUMAN STRAP_HUMAN SUCB1_HUMAN SUCB2_HUMAN SUMO2_HUMAN SYAM_HUMAN
1 8 1 1 4 1
SYDM_HUMAN SYFB_HUMAN SYIM_HUMAN SYLM_HUMAN SYMPK_HUMAN T2EB_HUMAN
20 7 20 7 2 14
TAGL2_HUMAN TCEA1_HUMAN TCOF_HUMAN TCP4_HUMAN TCPA_HUMAN TCPD_HUMAN
16 2 14 4 20 20
TCPE_HUMAN TCPH_HUMAN TCPZ_HUMAN TCRG1_HUMAN TCTP_HUMAN TERA_HUMAN
1 7 20 14 1 20
TFCP2_HUMAN TFR1_HUMAN TGO1_HUMAN THIC_HUMAN THIL_HUMAN THIM_HUMAN
2 7 14 16 1 10
THOC1_HUMAN THOC2_HUMAN THOC6_HUMAN TIF1B_HUMAN TKT_HUMAN TLN1_HUMAN
2 2 7 14 20 16
TLS1_HUMAN TMOD3_HUMAN TNPO1_HUMAN TOP1_HUMAN TPD54_HUMAN TPIS_HUMAN
12 2 1 2 2 20
TPM4_HUMAN TPR_HUMAN TR150_HUMAN TRIM4_HUMAN TRIPC_HUMAN TXLNA_HUMAN
14 4 4 7 2 4
TXND5_HUMAN TYPH_HUMAN TYY1_HUMAN U2AF2_HUMAN U3IP2_HUMAN U520_HUMAN
20 20 4 1 2 7
U5S1_HUMAN UB2L3_HUMAN UBA1_HUMAN UBA6_HUMAN UBR5_HUMAN UBXN1_HUMAN
7 7 1 20 2 14
UFC1_HUMAN UGPA_HUMAN VASP_HUMAN VATB2_HUMAN VATC1_HUMAN VIGLN_HUMAN
7 20 4 7 20 7
VIME_HUMAN VINC_HUMAN VPS35_HUMAN VPS4B_HUMAN VTA1_HUMAN WDR1_HUMAN
1 16 7 2 14 20
WDR26_HUMAN WDR5_HUMAN WIPF1_HUMAN XPO1_HUMAN XPO7_HUMAN XPOT_HUMAN
7 20 3 7 1 20
XRCC5_HUMAN XRCC6_HUMAN XRN2_HUMAN ZC3H4_HUMAN ZC3HF_HUMAN ZCHC8_HUMAN
1 1 2 4 14 4
ZFR_HUMAN ZMAT2_HUMAN ZN638_HUMAN ZPR1_HUMAN
2 2 4 14
Within cluster sum of squares by cluster:
[1] 264.263501 49.700719 56.330656 67.751763 14.481954 5.957289
[7] 93.836332 37.458926 0.000000 70.944777 48.773712 81.931179
[13] 0.000000 95.965312 0.000000 284.887483 501.054819 206.708688
[19] 77.724892 180.507238 0.000000
(between_SS / total_SS = 78.0 %)
Available components:
[1] "cluster" "centers" "totss" "withinss" "tot.withinss"
[6] "betweenss" "size" "iter" "ifault"
Evaluation of results:
Length Class Mode
cluster 574 -none- numeric
centers 357 -none- numeric
totss 1 -none- numeric
withinss 21 -none- numeric
tot.withinss 1 -none- numeric
betweenss 1 -none- numeric
size 21 -none- numeric
iter 1 -none- numeric
ifault 1 -none- numeric
Getting the cluster members:
Heatmap to see the patterns:
B cells nucleus
Joining everything:
K-means clustering with 15 clusters of sizes 2, 118, 1, 19, 3, 67, 1, 1, 256, 84, 8, 4, 4, 2, 1
Cluster means:
sum_acetyl_nuc_old sum_acetyl_nuc_young sum_AGEs_nuc_old sum_AGEs_nuc_young
1 -0.11541731 -0.11242369 15.66419292 -0.07108179
2 -0.06994998 -0.05307961 -0.05687595 -0.07108179
3 -0.11541731 -0.11242369 -0.05687595 -0.07108179
4 -0.11286009 -0.10466205 -0.05687595 -0.07108179
5 -0.10516767 -0.10003800 -0.05687595 12.80997311
6 -0.09231730 -0.08899296 -0.05687595 -0.07108179
7 2.09753333 2.15214745 -0.05687595 -0.07108179
8 -0.11541731 -0.11242369 -0.05687595 -0.07108179
9 -0.08620106 -0.07750663 -0.05283677 -0.06348594
10 -0.10961363 -0.10861105 -0.05687595 -0.07108179
11 0.20742960 0.57572820 -0.05687595 -0.07108179
12 -0.11541731 -0.11242369 -0.05687595 -0.07108179
13 11.33648666 9.41483000 -0.05687595 -0.07108179
14 0.05502811 0.03708030 -0.05687595 -0.07108179
15 -0.11541731 -0.11242369 -0.05687595 -0.07108179
sum_Kacyl_nuc_old sum_Kacyl_nuc_young sum_oxPTMs_nuc_old
1 -0.065972355 -0.05814972 0.70108586
2 -0.065972355 -0.05814972 -0.12810276
3 -0.065972355 -0.05814972 -0.15889308
4 0.031336601 -0.05814972 0.02438703
5 0.041608206 0.06663656 0.10634544
6 -0.064265245 -0.05814972 0.02814247
7 23.161220592 22.75748176 -0.15364260
8 -0.065972355 -0.05814972 -0.01345890
9 -0.049362470 -0.04551319 -0.11624287
10 -0.001151049 -0.05814972 0.11339919
11 0.017891802 0.78916862 0.37806855
12 -0.065972355 -0.05814972 0.00459848
13 -0.065972355 -0.05814972 0.30563327
14 0.828527657 -0.05814972 3.04682942
15 -0.065972355 -0.05814972 21.24552146
sum_oxPTMs_nuc_young sum_phospho_nuc_old sum_phospho_nuc_young
1 0.053022457 -0.15511903 -0.10343773
2 -0.052151764 -0.15336397 -0.07728052
3 -0.051948502 -0.15511903 -0.10343773
4 -0.040282293 -0.15358583 -0.09706591
5 0.011127166 -0.03384538 -0.06353310
6 -0.035622714 0.05566726 -0.04907495
7 -0.062539574 -0.15511903 0.50980860
8 -0.062539574 -0.15511903 0.68623240
9 -0.053274608 -0.14535574 -0.09708642
10 -0.017575362 0.03591880 0.04804257
11 0.001194004 6.44958126 1.78658449
12 -0.029660501 -0.15511903 -0.10343773
13 0.018254940 -0.15511903 -0.10343773
14 0.340774745 1.07790788 0.08851713
15 23.812745565 -0.15511903 20.73258641
sum_ubiq_nuc_old sum_ubiq_nuc_young sum_meth_nuc_old sum_meth_nuc_young
1 -0.058809225 -0.06371423 -0.09210118 -0.077929190
2 -0.091259116 -0.07658792 -0.01788633 0.075836845
3 21.154690859 19.48411330 -0.09210118 -0.077929190
4 -0.032063997 -0.07622736 -0.07303704 -0.021837578
5 -0.096563668 -0.07982437 -0.07785388 -0.003232343
6 -0.023587807 -0.09317109 0.03255298 -0.073075681
7 -0.096563668 -0.09850422 -0.09210118 -0.077929190
8 -0.096563668 -0.09850422 21.75815448 19.969765915
9 -0.078333256 -0.07944753 -0.05345205 -0.076700602
10 -0.003564406 -0.07561406 -0.05742290 -0.032360494
11 -0.034040828 -0.09850422 -0.09210118 -0.077929190
12 2.997247471 6.49391648 -0.09210118 -0.077929190
13 0.332417986 -0.09850422 -0.09210118 -0.077929190
14 -0.096563668 -0.09850422 0.11701102 0.196158329
15 -0.096563668 -0.09850422 -0.09210118 -0.077929190
ageing_score mean_hl_hours mean_mt ratio
1 -0.10466169 0.13252335 -1.2972336 0.15241154
2 -0.20503093 0.12181446 -1.2171704 -0.59063611
3 -0.36026256 -0.16121042 0.6684024 1.04445364
4 4.62607404 -0.03548911 -0.2593467 -0.28429824
5 -0.09331444 1.31396101 -1.0835775 0.29894576
6 -0.18630797 -0.22178718 -1.1887484 1.31735243
7 -0.32344219 -0.55457759 0.4250499 2.00394766
8 -0.30030082 -0.30720517 0.6432077 3.03966776
9 -0.14942466 0.01311493 0.6554852 -0.55837202
10 -0.14137912 -0.30285948 0.7128714 1.29022333
11 -0.30557684 -0.21282117 0.3143284 0.94934903
12 0.88487444 -0.35382374 -0.5817761 0.30247869
13 -0.34002913 -0.00726506 0.6764472 0.00238155
14 0.34227884 11.83994168 0.5978710 1.75345408
15 -0.03661717 -0.47419382 0.5339174 1.78772006
Clustering vector:
1433B_HUMAN 1433E_HUMAN 1433F_HUMAN 1433G_HUMAN 1433Z_HUMAN 2AAA_HUMAN
2 9 2 2 9 9
2ABA_HUMAN 3HIDH_HUMAN 6PGL_HUMAN AAAT_HUMAN AATC_HUMAN ABHDA_HUMAN
2 9 2 9 9 9
ACADM_HUMAN ACBP_HUMAN ACL6A_HUMAN ACLY_HUMAN ACON_HUMAN ACTN1_HUMAN
2 2 9 9 2 5
ACTN4_HUMAN ADK_HUMAN ADNP_HUMAN AHNK_HUMAN AIMP1_HUMAN AL9A1_HUMAN
9 9 10 10 2 9
ALDH2_HUMAN ALDOC_HUMAN ALDR_HUMAN AMPL_HUMAN AN32A_HUMAN AN32B_HUMAN
2 2 2 9 10 10
AN32E_HUMAN ANM5_HUMAN ANXA5_HUMAN AP3B1_HUMAN AQR_HUMAN ARFP1_HUMAN
6 9 9 9 9 9
ARI1A_HUMAN ARP2_HUMAN ARP3_HUMAN ASNS_HUMAN ATX10_HUMAN B2MG_HUMAN
10 1 2 9 2 9
BASI_HUMAN BASP1_HUMAN BAZ1B_HUMAN BOLA2_HUMAN BRD4_HUMAN BYST_HUMAN
2 6 10 2 10 10
BZW1_HUMAN C1TC_HUMAN C2D1A_HUMAN CALR_HUMAN CAND1_HUMAN CAPR1_HUMAN
9 9 6 6 9 6
CATA_HUMAN CATD_HUMAN CAZA1_HUMAN CBR1_HUMAN CBX3_HUMAN CBX5_HUMAN
9 2 2 2 6 6
CCAR1_HUMAN CCAR2_HUMAN CD2AP_HUMAN CDC42_HUMAN CDC5L_HUMAN CDC73_HUMAN
6 12 6 9 10 9
CDK12_HUMAN CH10_HUMAN CH60_HUMAN CHRD1_HUMAN CHTOP_HUMAN CKAP4_HUMAN
10 9 9 2 10 10
CKAP5_HUMAN CLH1_HUMAN CLIC1_HUMAN CLIP1_HUMAN CLPX_HUMAN CLU_HUMAN
9 2 9 10 9 9
CNBP_HUMAN COPB_HUMAN COPD_HUMAN COPG1_HUMAN COTL1_HUMAN CPIN1_HUMAN
9 2 9 2 9 9
CPSF1_HUMAN CPSF2_HUMAN CPSF5_HUMAN CPSF7_HUMAN CSN6_HUMAN CSTF2_HUMAN
2 9 2 6 2 6
CSTF3_HUMAN CTR9_HUMAN CUL1_HUMAN CUL3_HUMAN CUL4A_HUMAN CWC15_HUMAN
11 10 9 9 9 13
CYBP_HUMAN DAZP1_HUMAN DCK_HUMAN DDB1_HUMAN DDX21_HUMAN DDX42_HUMAN
9 6 9 9 10 6
DDX46_HUMAN DEK_HUMAN DHE3_HUMAN DHX15_HUMAN DHX36_HUMAN DHX9_HUMAN
6 6 9 9 9 9
DIDO1_HUMAN DKC1_HUMAN DLDH_HUMAN DNJA1_HUMAN DNJA2_HUMAN DNJB1_HUMAN
10 9 9 9 12 12
DNLI3_HUMAN DNMT1_HUMAN DRG1_HUMAN DRG2_HUMAN DSRAD_HUMAN DX39B_HUMAN
9 9 9 2 6 2
ECH1_HUMAN ECHA_HUMAN ECHM_HUMAN EDC4_HUMAN EDF1_HUMAN EEA1_HUMAN
9 9 2 11 6 10
EF1B_HUMAN EF1G_HUMAN EF2_HUMAN EFGM_HUMAN EFTU_HUMAN EIF3A_HUMAN
2 2 9 9 2 10
EIF3E_HUMAN EIF3I_HUMAN EIF3J_HUMAN EIF3M_HUMAN ELF1_HUMAN ENOA_HUMAN
9 9 6 2 11 2
ENPL_HUMAN ERAP1_HUMAN ERCC3_HUMAN ERH_HUMAN ERP29_HUMAN ESTD_HUMAN
2 9 9 13 2 9
ETFA_HUMAN ETFB_HUMAN EZRI_HUMAN F10A1_HUMAN F136A_HUMAN FABP5_HUMAN
2 9 6 6 2 9
FAF1_HUMAN FAS_HUMAN FEN1_HUMAN FKBP3_HUMAN FKBP4_HUMAN FKBP8_HUMAN
9 9 4 9 9 10
FLNA_HUMAN FLNB_HUMAN FPPS_HUMAN FUBP1_HUMAN FUBP2_HUMAN G3BP1_HUMAN
9 9 2 6 10 6
G3BP2_HUMAN G3P_HUMAN G6PD_HUMAN G6PI_HUMAN GANAB_HUMAN GFPT1_HUMAN
10 2 9 2 2 2
GLYM_HUMAN GOGB1_HUMAN GRP75_HUMAN GRPE1_HUMAN GSHR_HUMAN GSLG1_HUMAN
9 10 2 2 9 9
GSTO1_HUMAN GSTP1_HUMAN GT251_HUMAN HCD2_HUMAN HDDC2_HUMAN HEAT1_HUMAN
2 2 9 9 9 9
HEM6_HUMAN HNRH3_HUMAN HNRL1_HUMAN HNRL2_HUMAN HNRPF_HUMAN HNRPL_HUMAN
9 9 10 6 2 10
HNRPM_HUMAN HNRPQ_HUMAN HNRPR_HUMAN HNRPU_HUMAN HS105_HUMAN HS90A_HUMAN
10 6 6 1 9 4
HS90B_HUMAN HSP74_HUMAN HSP7C_HUMAN HXK2_HUMAN HYOU1_HUMAN I2BP2_HUMAN
4 2 4 9 2 6
IDH3A_HUMAN IDI1_HUMAN IF2A_HUMAN IF2B_HUMAN IF2G_HUMAN IF2P_HUMAN
2 9 9 10 9 10
IF4A3_HUMAN IF4G1_HUMAN IF5_HUMAN IF6_HUMAN ILEU_HUMAN ILF3_HUMAN
9 10 2 9 2 6
IMA1_HUMAN IMA5_HUMAN IMB1_HUMAN IPO7_HUMAN IPYR_HUMAN IQGA1_HUMAN
9 9 9 9 9 9
ITB1_HUMAN IVD_HUMAN IWS1_HUMAN JUND_HUMAN KAD2_HUMAN KAD3_HUMAN
9 9 10 6 9 2
KHDR1_HUMAN KINH_HUMAN KPYM_HUMAN KTHY_HUMAN KYNU_HUMAN LAP2A_HUMAN
6 10 9 9 9 11
LARP1_HUMAN LASP1_HUMAN LA_HUMAN LBR_HUMAN LDHA_HUMAN LDHB_HUMAN
10 10 9 2 9 9
LEG1_HUMAN LETM1_HUMAN LGUL_HUMAN LIS1_HUMAN LKHA4_HUMAN LMNA_HUMAN
2 9 9 9 9 10
LMNB1_HUMAN LONM_HUMAN LPPRC_HUMAN LRC47_HUMAN LRC59_HUMAN LS14A_HUMAN
14 9 2 2 6 11
LSM6_HUMAN LSM8_HUMAN LYAR_HUMAN MANF_HUMAN MAOM_HUMAN MAP2_HUMAN
9 13 3 9 2 6
MAP4_HUMAN MARCS_HUMAN MAT2B_HUMAN MATR3_HUMAN MCES_HUMAN MCM2_HUMAN
10 10 9 10 10 2
MCM4_HUMAN MCM5_HUMAN MCM6_HUMAN MCMBP_HUMAN MDC1_HUMAN MDHC_HUMAN
9 9 9 2 6 9
MDHM_HUMAN MDN1_HUMAN MECP2_HUMAN METK2_HUMAN MIF_HUMAN MK01_HUMAN
9 9 14 9 9 4
MOES_HUMAN MPPB_HUMAN MPRD_HUMAN MSH6_HUMAN MTA2_HUMAN MYH9_HUMAN
10 9 9 9 2 6
MYPT1_HUMAN NAA15_HUMAN NDUS1_HUMAN NDUS3_HUMAN NEB2_HUMAN NEDD8_HUMAN
10 9 2 9 15 2
NIPS1_HUMAN NIT2_HUMAN NMT1_HUMAN NOLC1_HUMAN NONO_HUMAN NP1L4_HUMAN
9 2 9 6 5 6
NPM_HUMAN NSF_HUMAN NU133_HUMAN NU153_HUMAN NUCB1_HUMAN NUCL_HUMAN
4 9 9 10 10 6
NUP50_HUMAN NUP88_HUMAN ODO2_HUMAN ODP2_HUMAN ODPA_HUMAN ODPB_HUMAN
6 9 9 9 9 9
P5CS_HUMAN P66A_HUMAN P66B_HUMAN PA2G4_HUMAN PABP1_HUMAN PAIRB_HUMAN
2 10 6 2 6 6
PARK7_HUMAN PARP1_HUMAN PCKGM_HUMAN PCNA_HUMAN PDC6I_HUMAN PDCD4_HUMAN
4 4 2 4 9 9
PDCD5_HUMAN PDCD6_HUMAN PDIA1_HUMAN PDIA3_HUMAN PDIA4_HUMAN PDIA6_HUMAN
6 9 9 2 2 2
PDLI1_HUMAN PDS5B_HUMAN PEBP1_HUMAN PELP1_HUMAN PFD2_HUMAN PFD3_HUMAN
10 9 9 6 6 2
PFD5_HUMAN PGAM1_HUMAN PGK1_HUMAN PGM1_HUMAN PGM2_HUMAN PGRC2_HUMAN
9 9 2 9 9 2
PIMT_HUMAN PITH1_HUMAN PLEC_HUMAN PLPL6_HUMAN PLRG1_HUMAN PNPH_HUMAN
2 9 2 9 10 9
PNPT1_HUMAN PP1A_HUMAN PP1RA_HUMAN PPCE_HUMAN PPIA_HUMAN PPIB_HUMAN
2 9 10 9 2 2
PPIH_HUMAN PRDX1_HUMAN PRDX2_HUMAN PRDX3_HUMAN PRDX5_HUMAN PRDX6_HUMAN
9 2 9 2 2 9
PRKDC_HUMAN PROF1_HUMAN PRP19_HUMAN PRP4_HUMAN PRP6_HUMAN PRP8_HUMAN
4 2 2 2 10 2
PRS4_HUMAN PRS6B_HUMAN PRS7_HUMAN PRS8_HUMAN PSA1_HUMAN PSA2_HUMAN
9 9 9 9 9 9
PSA3_HUMAN PSA5_HUMAN PSA7_HUMAN PSA_HUMAN PSB1_HUMAN PSD11_HUMAN
9 9 9 9 9 9
PSD12_HUMAN PSMD1_HUMAN PSMD2_HUMAN PSMD3_HUMAN PSMD5_HUMAN PSME1_HUMAN
9 9 9 9 2 2
PSME3_HUMAN PTBP1_HUMAN PUF60_HUMAN PUR6_HUMAN PUR9_HUMAN PURA_HUMAN
9 2 2 9 2 10
PUS7_HUMAN QCR7_HUMAN QKI_HUMAN QOR_HUMAN RAB14_HUMAN RAB5C_HUMAN
9 9 2 9 9 2
RAD21_HUMAN RADI_HUMAN RAE1L_HUMAN RAGP1_HUMAN RBBP4_HUMAN RBM12_HUMAN
10 6 9 9 9 10
RBM26_HUMAN RBM8A_HUMAN RCC2_HUMAN RD23A_HUMAN RD23B_HUMAN RECQ1_HUMAN
10 6 9 10 10 2
RENT1_HUMAN REPS1_HUMAN RFA1_HUMAN RFA2_HUMAN RL10_HUMAN RL12_HUMAN
12 6 4 4 9 9
RL14_HUMAN RL23A_HUMAN RL27A_HUMAN RL27_HUMAN RL30_HUMAN RL3_HUMAN
6 10 9 9 9 9
RL4_HUMAN RL5_HUMAN RL7_HUMAN RM12_HUMAN RM49_HUMAN ROA2_HUMAN
9 9 9 2 9 6
RPA1_HUMAN RPA2_HUMAN RPB2_HUMAN RPN1_HUMAN RRP44_HUMAN RS12_HUMAN
9 9 9 9 2 2
RS13_HUMAN RS20_HUMAN RS28_HUMAN RS3_HUMAN RS6_HUMAN RS8_HUMAN
9 9 2 4 10 9
RS9_HUMAN RSF1_HUMAN RSU1_HUMAN RT29_HUMAN RTCB_HUMAN RU17_HUMAN
9 7 9 9 9 10
RU2B_HUMAN S10A6_HUMAN SAFB1_HUMAN SAFB2_HUMAN SAHH_HUMAN SAP_HUMAN
9 9 10 10 9 9
SBDS_HUMAN SCOT1_HUMAN SERC_HUMAN SET_HUMAN SF01_HUMAN SF3A1_HUMAN
9 2 9 10 6 10
SF3A3_HUMAN SF3B1_HUMAN SF3B2_HUMAN SF3B3_HUMAN SF3B5_HUMAN SF3B6_HUMAN
2 10 6 9 13 9
SFPQ_HUMAN SGT1_HUMAN SIN3A_HUMAN SKP1_HUMAN SLIRP_HUMAN SMC1A_HUMAN
6 9 4 10 2 10
SMC3_HUMAN SMCA4_HUMAN SMCA5_HUMAN SMCE1_HUMAN SMD1_HUMAN SMD2_HUMAN
6 10 9 6 9 10
SMRC1_HUMAN SND1_HUMAN SNR40_HUMAN SNUT1_HUMAN SNX3_HUMAN SNX6_HUMAN
6 2 9 10 9 9
SODC_HUMAN SP16H_HUMAN SPB6_HUMAN SPSY_HUMAN SPT5H_HUMAN SPTB2_HUMAN
4 9 9 2 10 2
SPTN1_HUMAN SR140_HUMAN SRP14_HUMAN SRPK1_HUMAN SRRT_HUMAN SRS11_HUMAN
2 6 9 10 6 10
SRSF6_HUMAN SRSF7_HUMAN SSRP1_HUMAN STAG2_HUMAN STAT1_HUMAN STIP1_HUMAN
10 6 10 9 4 2
STRAP_HUMAN SUCB1_HUMAN SUCB2_HUMAN SUMO2_HUMAN SYAM_HUMAN SYDM_HUMAN
2 2 2 10 2 9
SYFB_HUMAN SYIM_HUMAN SYLM_HUMAN SYMPK_HUMAN T2EB_HUMAN TAGL2_HUMAN
9 9 9 11 6 2
TCEA1_HUMAN TCOF_HUMAN TCP4_HUMAN TCPA_HUMAN TCPD_HUMAN TCPE_HUMAN
10 6 10 9 9 2
TCPH_HUMAN TCPZ_HUMAN TCRG1_HUMAN TCTP_HUMAN TERA_HUMAN TFCP2_HUMAN
9 9 6 2 4 9
TFR1_HUMAN THIC_HUMAN THIL_HUMAN THIM_HUMAN THOC1_HUMAN THOC2_HUMAN
9 2 2 9 9 9
THOC6_HUMAN TIF1B_HUMAN TKT_HUMAN TLN1_HUMAN TMOD3_HUMAN TNPO1_HUMAN
9 6 9 9 9 2
TOP1_HUMAN TPD54_HUMAN TPIS_HUMAN TPM4_HUMAN TPR_HUMAN TR150_HUMAN
9 10 9 6 10 11
TRIM4_HUMAN TRIPC_HUMAN TXLNA_HUMAN TXND5_HUMAN TYPH_HUMAN TYY1_HUMAN
9 11 10 9 9 10
U2AF2_HUMAN U3IP2_HUMAN U520_HUMAN U5S1_HUMAN UB2L3_HUMAN UBA1_HUMAN
6 9 9 9 9 2
UBA6_HUMAN UBR5_HUMAN UBXN1_HUMAN UFC1_HUMAN UGPA_HUMAN VASP_HUMAN
9 10 6 9 9 10
VATB2_HUMAN VATC1_HUMAN VIGLN_HUMAN VIME_HUMAN VINC_HUMAN VPS35_HUMAN
9 9 9 5 9 9
VPS4B_HUMAN VTA1_HUMAN WDR1_HUMAN WDR26_HUMAN WDR5_HUMAN WIPF1_HUMAN
9 6 9 9 9 8
XPO1_HUMAN XPO7_HUMAN XPOT_HUMAN XRCC5_HUMAN XRCC6_HUMAN XRN2_HUMAN
9 2 9 4 4 9
ZC3H4_HUMAN ZC3HF_HUMAN ZCHC8_HUMAN ZFR_HUMAN ZMAT2_HUMAN ZN638_HUMAN
10 6 10 10 10 10
ZPR1_HUMAN
6
Within cluster sum of squares by cluster:
[1] 80.62915 356.02936 0.00000 100.77385 83.72987 151.55113 0.00000
[8] 0.00000 400.08578 237.02206 314.58719 55.10602 188.65998 12.20153
[15] 0.00000
(between_SS / total_SS = 80.7 %)
Available components:
[1] "cluster" "centers" "totss" "withinss" "tot.withinss"
[6] "betweenss" "size" "iter" "ifault"
Evaluation of results:
Length Class Mode
cluster 571 -none- numeric
centers 270 -none- numeric
totss 1 -none- numeric
withinss 15 -none- numeric
tot.withinss 1 -none- numeric
betweenss 1 -none- numeric
size 15 -none- numeric
iter 1 -none- numeric
ifault 1 -none- numeric
Getting the cluster members:
Heatmap to see the patterns:
Stability metrics and ageing
Disorder metrics
Joining everything:
K-means clustering with 10 clusters of sizes 56, 71, 75, 56, 2, 35, 51, 136, 25, 75
Cluster means:
mean_hl_hours mean_mt ratio
1 -0.4351049 0.6709120 1.9559220
2 -0.2485475 -0.6592530 -0.4032486
3 -0.3955260 0.7046951 0.3896776
4 -0.2761747 -1.7485734 -0.3688449
5 9.7407126 0.5954430 1.7356894
6 1.2970572 -1.2031424 -0.5902620
7 -0.2129423 -1.2543257 1.5095866
8 -0.4984478 0.7184165 -0.6623440
9 2.2130486 0.6634842 -0.6235982
10 0.6078305 0.5986910 -0.5813849
Clustering vector:
1433B_HUMAN 1433E_HUMAN 1433F_HUMAN 1433G_HUMAN 1433Z_HUMAN 2AAA_HUMAN
2 10 2 4 10 8
2ABA_HUMAN 3HIDH_HUMAN 6PGL_HUMAN AAAT_HUMAN AATC_HUMAN ABHDA_HUMAN
4 10 6 8 8 9
ACADM_HUMAN ACBP_HUMAN ACL6A_HUMAN ACLY_HUMAN ACON_HUMAN ACTB_HUMAN
4 6 8 8 2 4
ACTN1_HUMAN ACTN4_HUMAN ADK_HUMAN ADNP_HUMAN AHNK_HUMAN AIMP1_HUMAN
9 10 10 3 1 4
AKA12_HUMAN AL9A1_HUMAN ALDH2_HUMAN ALDOC_HUMAN ALDR_HUMAN AMPL_HUMAN
1 9 2 6 6 10
AN32A_HUMAN AN32B_HUMAN AN32E_HUMAN ANM5_HUMAN ANXA5_HUMAN AP3B1_HUMAN
10 10 6 8 10 3
AQR_HUMAN ARFP1_HUMAN ARI1A_HUMAN ARP2_HUMAN ARP3_HUMAN ASAH1_HUMAN
8 3 1 2 6 10
ASNS_HUMAN AT1B3_HUMAN ATX10_HUMAN BASI_HUMAN BASP1_HUMAN BAZ1B_HUMAN
8 8 2 4 7 3
BIP_HUMAN BOLA2_HUMAN BRD4_HUMAN BROX_HUMAN BYST_HUMAN BZW1_HUMAN
2 4 1 4 3 8
C1TC_HUMAN C2D1A_HUMAN CALR_HUMAN CALU_HUMAN CAND1_HUMAN CAPR1_HUMAN
10 7 7 2 10 7
CATA_HUMAN CATC_HUMAN CATD_HUMAN CAZA1_HUMAN CBR1_HUMAN CBX3_HUMAN
10 9 2 6 4 7
CBX5_HUMAN CCAR1_HUMAN CCAR2_HUMAN CCD12_HUMAN CD2AP_HUMAN CDC42_HUMAN
7 7 3 1 7 2
CDC5L_HUMAN CDK12_HUMAN CH10_HUMAN CH60_HUMAN CHRD1_HUMAN CHTOP_HUMAN
1 1 8 9 2 1
CKAP4_HUMAN CKAP5_HUMAN CLH1_HUMAN CLIC1_HUMAN CLIP1_HUMAN CLPX_HUMAN
10 3 2 10 1 8
CLU_HUMAN CNBP_HUMAN COPB_HUMAN COPD_HUMAN COPG1_HUMAN COTL1_HUMAN
8 8 4 3 2 9
CPIN1_HUMAN CPSF1_HUMAN CPSF2_HUMAN CPSF5_HUMAN CPSF7_HUMAN CSK21_HUMAN
8 2 8 2 7 2
CSN6_HUMAN CSTF2_HUMAN CSTF3_HUMAN CTR9_HUMAN CUL1_HUMAN CUL3_HUMAN
2 7 8 3 8 8
CUL4A_HUMAN CWC15_HUMAN CYBP_HUMAN DAZP1_HUMAN DCK_HUMAN DDB1_HUMAN
8 1 8 7 8 8
DDX21_HUMAN DDX42_HUMAN DDX46_HUMAN DEK_HUMAN DHE3_HUMAN DHX15_HUMAN
3 7 4 7 9 2
DHX36_HUMAN DHX9_HUMAN DIDO1_HUMAN DKC1_HUMAN DLDH_HUMAN DNJA2_HUMAN
8 10 1 10 10 2
DNJB1_HUMAN DNJC1_HUMAN DNLI3_HUMAN DNMT1_HUMAN DRG1_HUMAN DRG2_HUMAN
4 3 8 3 8 4
DSRAD_HUMAN DX39B_HUMAN ECH1_HUMAN ECHA_HUMAN ECHM_HUMAN EDC4_HUMAN
4 9 10 10 6 3
EDF1_HUMAN EEA1_HUMAN EF1B_HUMAN EF1G_HUMAN EF2_HUMAN EFGM_HUMAN
7 3 4 2 8 8
EFTU_HUMAN EIF3A_HUMAN EIF3E_HUMAN EIF3I_HUMAN EIF3J_HUMAN EIF3M_HUMAN
6 3 8 8 7 4
ELL_HUMAN ENOA_HUMAN ENPL_HUMAN ERAP1_HUMAN ERCC3_HUMAN ERH_HUMAN
7 6 4 8 8 8
ERP29_HUMAN ESTD_HUMAN ETFA_HUMAN ETFB_HUMAN EZRI_HUMAN F10A1_HUMAN
6 8 6 10 7 7
F136A_HUMAN FABP5_HUMAN FAF1_HUMAN FAH2A_HUMAN FAS_HUMAN FEN1_HUMAN
4 8 3 10 8 4
FIP1_HUMAN FKBP3_HUMAN FKBP4_HUMAN FKBP8_HUMAN FLNA_HUMAN FLNB_HUMAN
1 3 8 3 3 10
FPPS_HUMAN FUBP1_HUMAN FUBP2_HUMAN G3BP1_HUMAN G3BP2_HUMAN G3P_HUMAN
2 7 1 7 1 6
G6PD_HUMAN G6PI_HUMAN GANAB_HUMAN GFPT1_HUMAN GLYM_HUMAN GOGB1_HUMAN
10 6 4 4 8 3
GRP75_HUMAN GRPE1_HUMAN GSHR_HUMAN GSLG1_HUMAN GSTO1_HUMAN GSTP1_HUMAN
2 4 10 8 6 4
GT251_HUMAN HCD2_HUMAN HDDC2_HUMAN HEAT1_HUMAN HEM6_HUMAN HNRH3_HUMAN
8 9 10 8 8 8
HNRL1_HUMAN HNRL2_HUMAN HNRPF_HUMAN HNRPL_HUMAN HNRPM_HUMAN HNRPQ_HUMAN
1 7 4 3 3 2
HNRPR_HUMAN HNRPU_HUMAN HS105_HUMAN HS90A_HUMAN HS90B_HUMAN HSP74_HUMAN
7 7 3 3 2 4
HSP7C_HUMAN HXK2_HUMAN HYOU1_HUMAN IDH3A_HUMAN IDI1_HUMAN IF2A_HUMAN
2 8 4 6 8 8
IF2B_HUMAN IF2G_HUMAN IF2P_HUMAN IF4A3_HUMAN IF4G1_HUMAN IF5_HUMAN
3 8 1 8 1 2
IF6_HUMAN ILEU_HUMAN ILF3_HUMAN IMA4_HUMAN IMA5_HUMAN IMB1_HUMAN
8 6 7 8 8 8
IPO7_HUMAN IPYR_HUMAN IQGA1_HUMAN ITB1_HUMAN IVD_HUMAN IWS1_HUMAN
8 2 8 8 10 1
JUND_HUMAN KAD2_HUMAN KAD3_HUMAN KHDR1_HUMAN KINH_HUMAN KPYM_HUMAN
7 9 6 7 3 10
KTHY_HUMAN KYNU_HUMAN LACB2_HUMAN LAP2A_HUMAN LARP1_HUMAN LASP1_HUMAN
8 8 8 6 1 1
LA_HUMAN LBR_HUMAN LDHA_HUMAN LDHB_HUMAN LEG1_HUMAN LETM1_HUMAN
10 6 10 10 6 3
LGUL_HUMAN LIS1_HUMAN LKHA4_HUMAN LMNA_HUMAN LMNB1_HUMAN LONM_HUMAN
8 8 10 3 5 10
LPPRC_HUMAN LRC47_HUMAN LRC59_HUMAN LS14A_HUMAN LSM6_HUMAN LSM8_HUMAN
4 2 4 1 8 10
LUZP1_HUMAN LYAR_HUMAN LYPA1_HUMAN MANF_HUMAN MAOM_HUMAN MAP2_HUMAN
1 3 8 8 2 2
MAP4_HUMAN MARCS_HUMAN MAT2B_HUMAN MATR3_HUMAN MCES_HUMAN MCM2_HUMAN
1 1 8 1 3 4
MCM4_HUMAN MCM5_HUMAN MCM6_HUMAN MCMBP_HUMAN MDC1_HUMAN MDHC_HUMAN
8 8 8 4 1 9
MDHM_HUMAN MDN1_HUMAN MECP2_HUMAN METK2_HUMAN MIF_HUMAN MK01_HUMAN
9 8 5 8 8 2
MK14_HUMAN MOES_HUMAN MPPB_HUMAN MPRD_HUMAN MSH6_HUMAN MYH9_HUMAN
8 3 8 8 8 7
MYPT1_HUMAN NAA15_HUMAN NDUS1_HUMAN NDUS3_HUMAN NEB2_HUMAN NEDD8_HUMAN
1 8 2 2 1 4
NIPS1_HUMAN NIT2_HUMAN NMT1_HUMAN NOLC1_HUMAN NONO_HUMAN NP1L4_HUMAN
10 2 3 7 7 2
NPM_HUMAN NSF_HUMAN NU133_HUMAN NUCB1_HUMAN NUCL_HUMAN NUP50_HUMAN
7 8 8 1 7 7
NUP88_HUMAN ODO2_HUMAN ODP2_HUMAN ODPA_HUMAN ODPB_HUMAN P4HA1_HUMAN
8 9 10 8 10 4
P5CS_HUMAN P66A_HUMAN PA2G4_HUMAN PABP1_HUMAN PAIRB_HUMAN PARK7_HUMAN
4 1 4 4 7 10
PARP1_HUMAN PCKGM_HUMAN PCNA_HUMAN PDC6I_HUMAN PDCD5_HUMAN PDCD6_HUMAN
2 4 2 3 7 8
PDIA1_HUMAN PDIA3_HUMAN PDIA4_HUMAN PDIA6_HUMAN PDLI1_HUMAN PDS5B_HUMAN
10 4 2 2 3 3
PEBP1_HUMAN PELP1_HUMAN PFD2_HUMAN PFD4_HUMAN PGAM1_HUMAN PGK1_HUMAN
10 7 2 6 10 6
PGM1_HUMAN PGM2_HUMAN PGRC2_HUMAN PIMT_HUMAN PITH1_HUMAN PLBL2_HUMAN
9 9 4 4 3 8
PLEC_HUMAN PLOD1_HUMAN PLPL6_HUMAN PLRG1_HUMAN PNPH_HUMAN PNPT1_HUMAN
2 8 8 3 10 2
PP1A_HUMAN PP1RA_HUMAN PPCE_HUMAN PPIA_HUMAN PPIB_HUMAN PPIH_HUMAN
8 1 10 6 2 8
PRDX1_HUMAN PRDX2_HUMAN PRDX3_HUMAN PRDX5_HUMAN PRDX6_HUMAN PRKDC_HUMAN
4 9 6 6 10 9
PROF1_HUMAN PRP19_HUMAN PRP4_HUMAN PRP6_HUMAN PRP8_HUMAN PRS4_HUMAN
6 2 4 3 2 3
PRS6B_HUMAN PRS7_HUMAN PRS8_HUMAN PSA1_HUMAN PSA2_HUMAN PSA3_HUMAN
8 8 8 10 10 10
PSA5_HUMAN PSA7_HUMAN PSA_HUMAN PSB1_HUMAN PSD11_HUMAN PSD12_HUMAN
10 10 10 10 8 8
PSMD1_HUMAN PSMD2_HUMAN PSMD3_HUMAN PSMD5_HUMAN PSME1_HUMAN PSME3_HUMAN
8 2 3 2 2 8
PTBP1_HUMAN PUF60_HUMAN PUR6_HUMAN PUR9_HUMAN PURA_HUMAN PUS7_HUMAN
4 2 10 2 3 8
PYC_HUMAN QCR7_HUMAN QOR_HUMAN RAB14_HUMAN RAB5C_HUMAN RAC1_HUMAN
8 9 8 8 2 8
RADI_HUMAN RAE1L_HUMAN RAGP1_HUMAN RBM12_HUMAN RBM26_HUMAN RBM8A_HUMAN
7 8 2 1 1 7
RCC2_HUMAN RD23A_HUMAN RD23B_HUMAN RECQ1_HUMAN RENT1_HUMAN REPS1_HUMAN
3 1 1 4 4 1
RFA1_HUMAN RFA2_HUMAN RL10_HUMAN RL12_HUMAN RL14_HUMAN RL23A_HUMAN
8 3 8 2 4 3
RL27A_HUMAN RL27_HUMAN RL30_HUMAN RL3_HUMAN RL4_HUMAN RL5_HUMAN
10 10 8 10 10 8
RL7_HUMAN RM12_HUMAN RM49_HUMAN ROA2_HUMAN RPA1_HUMAN RPA2_HUMAN
10 6 3 7 8 8
RPB2_HUMAN RPN1_HUMAN RRP44_HUMAN RS12_HUMAN RS13_HUMAN RS20_HUMAN
8 8 2 2 8 10
RS28_HUMAN RS3_HUMAN RS6_HUMAN RS8_HUMAN RS9_HUMAN RSF1_HUMAN
4 10 3 10 10 1
RSU1_HUMAN RT29_HUMAN RTCB_HUMAN RU17_HUMAN RU2B_HUMAN S10A6_HUMAN
8 8 8 1 3 10
SAFB1_HUMAN SAFB2_HUMAN SAHH_HUMAN SAP_HUMAN SBDS_HUMAN SCOT1_HUMAN
1 1 10 8 8 6
SERC_HUMAN SERPH_HUMAN SET_HUMAN SF01_HUMAN SF3A1_HUMAN SF3A3_HUMAN
8 2 1 7 1 4
SF3B1_HUMAN SF3B2_HUMAN SF3B3_HUMAN SF3B5_HUMAN SFPQ_HUMAN SGT1_HUMAN
3 7 10 8 7 8
SIN3A_HUMAN SLIRP_HUMAN SMC1A_HUMAN SMC3_HUMAN SMCA4_HUMAN SMCA5_HUMAN
3 4 3 2 1 3
SMD1_HUMAN SMD2_HUMAN SMRC1_HUMAN SND1_HUMAN SNR40_HUMAN SNUT1_HUMAN
3 9 7 4 8 1
SNX3_HUMAN SNX6_HUMAN SODC_HUMAN SP16H_HUMAN SPB6_HUMAN SPSY_HUMAN
8 8 6 3 9 2
SPT5H_HUMAN SPTB2_HUMAN SPTN1_HUMAN SR140_HUMAN SRP14_HUMAN SRPK1_HUMAN
3 2 4 7 3 3
SRRT_HUMAN SRS11_HUMAN SRSF6_HUMAN SRSF7_HUMAN SSRP1_HUMAN STAG2_HUMAN
7 1 1 7 3 3
STAT1_HUMAN STIP1_HUMAN STRAP_HUMAN SUCB1_HUMAN SUCB2_HUMAN SUMO2_HUMAN
8 2 2 4 6 3
SYAM_HUMAN SYDM_HUMAN SYFB_HUMAN SYIM_HUMAN SYLM_HUMAN SYMPK_HUMAN
4 8 10 10 8 3
T2EB_HUMAN TAGL2_HUMAN TCEA1_HUMAN TCOF_HUMAN TCP4_HUMAN TCPA_HUMAN
2 2 3 7 1 10
TCPD_HUMAN TCPE_HUMAN TCPH_HUMAN TCPZ_HUMAN TCRG1_HUMAN TCTP_HUMAN
10 4 10 10 7 2
TERA_HUMAN TFCP2_HUMAN TFR1_HUMAN TGO1_HUMAN THIC_HUMAN THIL_HUMAN
8 3 8 7 2 6
THIM_HUMAN THOC1_HUMAN THOC2_HUMAN THOC6_HUMAN TIF1B_HUMAN TKT_HUMAN
9 3 3 8 2 9
TLN1_HUMAN TLS1_HUMAN TMOD3_HUMAN TNPO1_HUMAN TOP1_HUMAN TPD54_HUMAN
2 1 3 2 3 3
TPIS_HUMAN TPM4_HUMAN TPR_HUMAN TR150_HUMAN TRIPC_HUMAN TXD12_HUMAN
9 6 1 1 3 2
TXLNA_HUMAN TXND5_HUMAN TYPH_HUMAN TYY1_HUMAN U2AF2_HUMAN U3IP2_HUMAN
1 10 8 1 2 3
U520_HUMAN U5S1_HUMAN UB2L3_HUMAN UBA1_HUMAN UBA6_HUMAN UBR5_HUMAN
2 8 8 4 10 3
UBXN1_HUMAN UFC1_HUMAN UGPA_HUMAN VASP_HUMAN VATB2_HUMAN VATC1_HUMAN
7 8 9 1 8 8
VIGLN_HUMAN VIME_HUMAN VINC_HUMAN VPS29_HUMAN VPS35_HUMAN VPS4B_HUMAN
8 6 9 8 8 3
VTA1_HUMAN WDR1_HUMAN WDR26_HUMAN WDR5_HUMAN WIPF1_HUMAN XPO1_HUMAN
4 10 8 10 1 8
XPO7_HUMAN XPOT_HUMAN XRCC5_HUMAN XRCC6_HUMAN XRN2_HUMAN ZC3H4_HUMAN
4 8 6 10 3 1
ZC3HF_HUMAN ZCHC8_HUMAN ZFR_HUMAN ZMAT2_HUMAN ZN638_HUMAN ZPR1_HUMAN
7 3 3 3 1 7
Within cluster sum of squares by cluster:
[1] 37.561272 30.494975 30.171854 26.638208 9.940778 28.442950 51.098721
[8] 35.445359 18.904309 30.225477
(between_SS / total_SS = 82.9 %)
Available components:
[1] "cluster" "centers" "totss" "withinss" "tot.withinss"
[6] "betweenss" "size" "iter" "ifault"
Evaluation of results:
Length Class Mode
cluster 582 -none- numeric
centers 30 -none- numeric
totss 1 -none- numeric
withinss 10 -none- numeric
tot.withinss 1 -none- numeric
betweenss 1 -none- numeric
size 10 -none- numeric
iter 1 -none- numeric
ifault 1 -none- numeric
Getting the cluster members:
Heatmap to see the patterns:
PCA
Importance of components:
PC1 PC2 PC3
Standard deviation 1.0590 1.0116 0.9248
Proportion of Variance 0.3738 0.3411 0.2851
Cumulative Proportion 0.3738 0.7149 1.0000
PC1 PC2 PC3
mean_hl_hours -0.6773486 0.3667218 -0.6377413
mean_mt -0.1316366 -0.9133215 -0.3853773
ratio 0.7237891 0.1770847 -0.6669110